Publications

 

Updated publication list October 2020

2020

  1. Jakobsen LH, Øvlisen AK, Eloranta S, Bøgsted M, Severinsen MT, Smedby KE, Maurer MJ, El-Galaly TC. A narrative review of survival normalization in non-Hodgkin lymphoma: useful for better patient counselling and an endpoint for clinical trials? Ann Lymphoma 2020;4:5
  2. Helso SN, Roug AS, Mork M, Maksten EF, Severinsen MT. Severe Peripheral Neuropathy From Treatment With Arsenic Trioxide in a Patient Suffering From Acute Promyelocytic Leukemia. J Hematol. 2020 Sep;9(3):89-92. doi: 10.14740/jh617. Epub 2020 Aug 14. PMID: 32855758; PMCID: PMC7430865.
  3. Ellern Bilgrau, A, Peeters, CF, Svante Eriksen, P., Bøgsted, M, van Wieringen, WN. Targeted Fused Ridge Estimation of Inverse Covariance Matrices from Multiple High-Dimensional Data Classes. Journal of Machine Learning Research (2020), 21, 1–52
  4. Glenthøj A, Jakobsen LH, Sengeløv H, Ahmad SA, Qvist K, Rewes A, Poulsen CB, Overgaard UM, Mølle I, Severinsen MT, Strandholdt CN, Maibom J, Kodahl AR, Ryg J, Ravn P, Johansen IS, Helsø SN, Jensen-Fangel S, Kisielewicz J, Wiese L, Helleberg M, Kirk O, Clausen MR, Frederiksen H. SARS-CoV-2 infection among patients with haematological disorders: Severity and one-month outcome in 66 Danish patients in a nationwide cohort study. Eur J Haematol. 2020 Sep 16. doi: 10.1111/ejh.13519. Epub ahead of print. PMID: 32939853
  5. Xu-Monette ZY, Zhang H, Zhu F, Tzankov A, Bhagat G, Visco C, Dybkaer K, Chiu A, Tam W, Zu Y, Hsi ED, You H, Huh J, Ponzoni M, Ferreri AJM, Møller MB, Parsons BM, van Krieken JH, Piris MA, Winter JN, Hagemeister FB, Shahbaba B, De Dios I, Zhang H, Li Y, Xu B, Albitar M, Young KH. A refined cell-of-origin classifier with targeted NGS and artificial intelligence shows robust predictive value in DLBCL. Blood Adv. 2020 Jul 28;4(14):3391-3404. doi: 10.1182/bloodadvances.2020001949. PMID: 32722783; PMCID: PMC7391158.
  6. Kastritis E, Leleu X, Arnulf B, Zamagni E, Cibeira MT, Kwok F, Mollee P, Hájek R, Moreau P, Jaccard A, Schönland SO, Filshie R, Nicolas-Virelizier E, Augustson B, Mateos MV, Wechalekar A, Hachulla E, Milani P, Dimopoulos MA, Fermand JP, Foli A, Gavriatopoulou M, Klersy C, Palumbo A, Sonneveld P, Johnsen HE, Merlini G, Palladini G. Bortezomib, Melphalan, and Dexamethasone for Light-Chain Amyloidosis. J Clin Oncol. 2020 Jul 30:JCO2001285. doi: 10.1200/JCO.20.01285. Epub ahead of print. PMID: 32730181.
  7. Kristensen D, Helsø SN, Jensen P, Severinsen MT, Roug AS. [Fever, loss of vision and acute promyelocytic leukemia at the pandemic ward]. Ugeskr Laeger. 2020 Jul 13;182(29):V04200253. Danish. PMID: 32734862.
  8. Tobberup R, Carus A, Rasmussen HH, Falkmer UG, Jorgensen MG, Schmidt EB, Jensen NA, Mark EB, Delekta AM, Antoniussen CS, Bøgsted M, Holst M. Feasibility of a multimodal intervention on malnutrition in patients with lung cancer during primary anti-neoplastic treatment. Clin Nutr. 2020 Jun 9:S0261-5614(20)30287-9. doi: 10.1016/j.clnu.2020.05.050. Epub ahead of print. PMID: 32600857.
  9. Thomsen EA, Rovsing AB, Anderson MV, Due H, Huang J, Luo Y, Dybkaer K, Mikkelsen JG. Identification of BLNK and BTK as mediators of rituximab-induced programmed cell death by CRISPR screens in GCB-subtype diffuse large B-cell lymphoma. Mol Oncol. 2020 Jun 25. doi: 10.1002/1878-0261.12753. Epub ahead of print. PMID: 32585766.
  10. Vesteghem C, Brøndum RF, Sønderkær M, Sommer M, Schmitz A, Bødker JS, Dybkær K, El-Galaly TC, Bøgsted M. Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives. Brief Bioinform. 2020 May 21;21(3):936-945. doi: 10.1093/bib/bbz044. PMID: 31263868; PMCID: PMC7299292.
  11. Nesic M, El-Galaly TC, Bøgsted M, Pedersen IS, Dybkær K. Mutational landscape of immune surveillance genes in diffuse large B-cell lymphoma. Expert Rev Hematol. 2020 Apr 27:1-14. doi: 10.1080/17474086.2020.1755958. [Epub ahead of print] PubMed PMID: 32293210.
  12. Schönherz AA, Bødker JS, Schmitz A, Brøndum RF, Jakobsen LH, Roug AS, Severinsen MT, El-Galaly TC, Jensen P, Johnsen HE, Bøgsted M, Dybkær K. Normal myeloid progenitor cell subset-associated gene signatures for acute myeloid leukaemia subtyping with prognostic impact. PLoS One. 2020 Apr 23;15(4):e0229593. doi: 10.1371/journal.pone.0229593. eCollection 2020. PubMed PMID: 32324791.
  13. Øvlisen AK, Jakobsen LH, Kragholm KH, Nielsen RE, Hutchings M, Dahl-Sørensen RB, Frederiksen H, Stoltenberg D, Bøgsted M, Østgård LSG, Severinsen MT, El-Galaly TC. Depression and anxiety in Hodgkin lymphoma patients: A Danish nationwide cohort study of 945 patients. Cancer Med. 2020 Apr 17. doi:
    10.1002/cam4.2981. [Epub ahead of print] PubMed PMID: 32301251.
  14. Kristensen D, Nielsen LB, Roug AS, Kristensen TC, El-Galaly TC, Nørgaard JM, Marcher CW, Schöllkopf C, Theilgaard-Mönch K, Severinsen MT. The prognostic effect of smoking status on intensively treated acute myeloid leukaemia – A Danish nationwide cohort study. Br J Haematol. 2020 Apr 21. doi: 10.1111/bjh.16667. [Epub ahead of print] PubMed PMID: 32316076.
  15. Gade IL, Severinsen MT, Kragholm KH, Kristensen SR, Torp-Pedersen C, Riddersholm SJ. Epidemiology of Venous Thromboembolism After Second Cancer. Clin Epidemiol. 2020 Apr 8;12:377-386. doi: 10.2147/CLEP.S247823. eCollection 2020. PubMed PMID: 32308493; PubMed Central PMCID: PMC7152787.
  16. Jakobsen LH, Andersson TM, Biccler JL, Poulsen LØ, Severinsen MT, El-Galaly TC, Bøgsted M. On estimating the time to statistical cure. BMC Med Res Methodol. 2020 Mar 26;20(1):71. doi: 10.1186/s12874-020-00946-8. PubMed PMID: 32216765; PubMed Central PMCID: PMC7098130.
  17. Due H, Brøndum RF, Young KH, Bøgsted M, Dybkær K. MicroRNAs associated to single drug components of R-CHOP identifies diffuse large B-cell lymphoma patients with poor outcome and adds prognostic value to the international prognostic index. BMC Cancer. 2020 Mar 20;20(1):237. doi: 10.1186/s12885-020-6643-8. PubMed PMID: 32192453; PubMed Central PMCID: PMC7082970.
  18. Husby S, Favero F, Nielsen C, Sørensen BS, Bæch J, Grell K, Hansen JW, Rodriguez-Gonzalez FG, Haastrup EK, Fischer-Nielsen A, Andersen P, Arboe B, Sækmose SG, Hansen PB, Christiansen I, Clasen-Linde E, Meldgaard L, Ebbesen LH, Segel EK, Josefsson P, Thorsgaard M, El-Galaly TC, Brown P, Weischenfeldt J, Larsen TS, Grønbæk K. Clinical impact of clonal hematopoiesis in patients with lymphoma undergoing ASCT: a national population-based cohort study. Leukemia. 2020 Mar 20. doi: 10.1038/s41375-020-0795-z. [Epub ahead of print] PubMed PMID: 32203146.
  19. El-Galaly TC, Cheah CY, Kristensen D, Hutchison A, Hay K, Callréus T, Villa D. Potentials, challenges and future of chimeric antigen receptor T-cell therapy in non-Hodgkin lymphomas. Acta Oncol. 2020 Mar 19:1-9. doi: 10.1080/0284186X.2020.1741680. [Epub ahead of print] PubMed PMID: 32189546.
  20. Biccler JL, Bøgsted M, Van Aelst S, Versonck T. Outlier robust modeling of survival curves in the presence of potentially time-varying coefficients. Statistical Methods in Medical Research, 2020 Mar 17. https://doi.org/10.1177/0962280220910193
  21. Brøndum RF, Michaelsen TY, Bøgsted M. Regression on imperfect class labels derived by unsupervised clustering. Brief Bioinform. 2020 Mar 3. pii: bbaa014. doi: 10.1093/bib/bbaa014. [Epub ahead of print] PubMed PMID: 32124917.
  22. Rasmussen LS, Fristrup CW, Jensen BV, Pfeiffer P, Weber B, Yilmaz MK, Poulsen LØ, Ladekarl M, Østerlind K, Larsen JS, Skuladottir H, Hansen CP, Mortensen MB, Mortensen FV, Sall M, Detlefsen S, Bøgsted M, Falkmer UG. Initial treatment and survival in 4163 Danish patients with pancreatic cancer: A nationwide unselected real-world register study. Eur J Cancer. 2020 Feb 29;129:50-59. doi: 10.1016/j.ejca.2020.01.015. [Epub ahead of print] PubMed PMID: 32120275
  23. Morello L, Rattotti S, Giordano L, Jerkeman M, van Meerten T, Krawczyk K, Moita F, Marino D, Ferrero S, Szymczyk M, Aurer I, El-Galaly TC, Di Rocco A, Visco C, Carli G, Defrancesco I, Carlo-Stella C, Dreyling M, Santoro A, Arcaini L. Mantle Cell Lymphoma of Mucosa-Associated Lymphoid Tissue: A European Mantle Cell Lymphoma Network Study. Hemasphere. 2019 Dec 16;4(1):e302. doi: 10.1097/HS9.0000000000000302. eCollection 2020 Feb. PubMed PMID: 32072136; PubMed Central PMCID: PMC7000480.
  24. Baech J, Hansen SM, Jakobsen LH, Øvlisen AK, Severinsen MT, Brown PN, Vestergaard P, Frederiksen H, Jørgensen J, Starklint J, Josefsson P, Hammer T, Clausen MR, Torp-Pedersen C, Jensen P, El-Galaly TC. Increased risk of osteoporosis following commonly used first-line treatments for lymphoma: a Danish Nationwide Cohort Study. Leuk Lymphoma. 2020 Feb 11:1-10. doi: 10.1080/10428194.2020.1723015. [Epub ahead of print] PubMed PMID: 32043382.
  25. Jakobsen LH, Ellin F, Smeland KB, Wästerlid T, Christensen JH, Jørgensen JM, Josefsson PL, Holte H, Blaker YN, Grauslund JH, Bjørn J, Molin D, Lagerlöf I, Smedby KE, Colvin K, Thanarajasingam G, Maurer MJ, Habermann TM, Song KW, Zhu KY, Gerrie AS, Cheah CY, El-Galaly TC. Minimal relapse risk and excellent survival among Burkitt lymphoma patients treated with intensive immunochemotherapy. Br J Haematol. 2020 Feb 4. doi: 10.1111/bjh.16425. [Epub ahead of print] PubMed PMID: 32017050.
  26. Bødker JS, Sønderkær M, Vesteghem C, Schmitz A, Brøndum RF, Sommer M, Rytter AS, Nielsen MM, Madsen J, Jensen P, Pedersen IS, Grubach L, Severinsen MT, Roug AS, El-Galaly TC, Dybkær K, Bøgsted M. Development of a Precision Medicine Workflow in Hematological Cancers, Aalborg University Hospital, Denmark. Cancers (Basel). 2020 Jan 29;12(2). pii: E312. doi: 10.3390/cancers12020312. PubMed PMID: 32013121.
  27. Jakobsen LH, Bøgsted M, Clements M. Generalized parametric cure models for relative survival. Biom J. 2020 Jan 20. doi: 10.1002/bimj.201900056. [Epub ahead of print] PubMed PMID: 31957910.
  28. El-Galaly TC, Cheah CY. Mantle cell lymphoma – where precision medicine based on response-adapted treatment strategies could show its full worth. Br J Haematol. 2020 Jan 30. doi: 10.1111/bjh.16396. [Epub ahead of print] PubMed PMID: 31997341.
  29. Sunderland AJ, Steiner RE, Al Zahrani M, Pinnix CC, Dabaja BS, Gunther JR, Nastoupil LJ, Jerkeman M, Joske D, Cull G, El-Galaly T, Villa D, Cheah CY. An international multicenter retrospective analysis of patients with extranodal marginal zone lymphoma and histologically confirmed central nervous system and dural involvement. Cancer Med. 2020 Jan;9(2):663-670. doi: 10.1002/cam4.2732. Epub 2019 Dec 5. PubMed PMID: 31808316; PubMed Central PMCID: PMC6970027.
  30. Shah N, Wakabayashi T, Kawamura Y, Skovbjerg CK, Wang MZ, Mustamin Y, Isomura Y, Gupta V, Jin H, Mun T, Sandal N, Azuma F, Fukai E, Seren Ü, Kusakabe S, Kikuchi Y, Nitanda S, Kumaki T, Hashiguchi M, Tanaka H, Hayashi A, Sønderkær M, Nielsen KL, Schneeberger K, Vilhjalmsson B, Akashi R, Stougaard J, Sato S, Schierup MH, Andersen SU. Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nat Commun. 2020 Jan 14;11(1):253. doi: 10.1038/s41467-019-14213-y. PubMed PMID: 31937774; PubMed Central PMCID: PMC6959357.

 

NEXT Bioinformatics Activity Report 2015-2018

 

Publications 2019

Publications 2018

 Publications 2017

Publications 2016

Publications 2015

Publications 2014

Publications 2013

Publications 2012

Publications 2011

Publications 2010

Publications 2009 – 2004